ChIP-Atlas
A data-mining suite for exploring epigenomic landscapes by fully integrating 428,000 ChIP-seq, ATAC-seq and Bisulfite-seq experiments.
ChIP-Atlas: Peak Browser
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ChIP-Atlas: Publication
Matsuda, K., et al. ChIP-seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network. Development (2017).
ChIP-Atlas: Target Genes
This work is supported by NIG Supercomputer system and JST NBDC JPMJND2202. All data and analysis tools provided by ChIP-Atlas are licensed under CC-BY 4.0 .Attribution should be made to our publication when using these resources. If something went wrong, check NIG Supercomputer system maintenance information. Need help?
ChIP-Atlas: Enrichment Analysis
All data and analysis tools provided by ChIP-Atlas are licensed under CC-BY 4.0 . Attribution should be made to our publication when using these resources. If something went wrong, check NIG Supercomputer system maintenance information.
ChIP-Atlas: Dataset Search
All data and analysis tools provided by ChIP-Atlas are licensed under CC-BY 4.0 . Attribution should be made to our publication when using these resources. If something went wrong, check NIG Supercomputer system maintenance information.
ChIP-Atlas: Colocalization
This work is supported by NIG Supercomputer system and JST NBDC JPMJND2202. All data and analysis tools provided by ChIP-Atlas are licensed under CC-BY 4.0 .Attribution should be made to our publication when using these resources. If something went wrong, check NIG Supercomputer system maintenance information. Need help?
ChIP-Atlas: Diff Analysis
This work is supported by NIG Supercomputer system and JST NBDC JPMJND2202. All data and analysis tools provided by ChIP-Atlas are licensed under CC-BY 4.0 .Attribution should be made to our publication when using these resources. If something went wrong, check NIG Supercomputer system maintenance information. Need help?
ChIP-Atlas: SRX13293443
ChIP-Seq library_source GENOMIC library_selection ChIP library_construction_protocol Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared for sequencing using standard Illumina protocols.
ChIP-Atlas: SRX4679524
Attributes by original data submitter Sample source_name Cell Culture tissue SKNMM ATRX in-frame fusion metastatic neuroblastoma ... Sequenced DNA Library library_strategy ChIP-Seq library_source GENOMIC library_selection ChIP library_construction_protocol XL ChIP as previously described (Fontanals-Cirera et al., 2017). Library prepared as ...