A functional gene module identification algorithm in gene …
2023年2月17日 · GMIGAGO is an overlapping gene module identification algorithm actually, which mainly includes two stages: In the first stage (initial identification of gene modules), Improved Partitioning Around Medoids Based on Genetic Algorithm (PAM-GA) is used for the …
monocle3系列之六：共调控基因模块 - 简书
一旦找到了感兴趣的差异基因，Monocle可以将它们分组为module。通过调用find_gene_modules()函数，在基因（而不是细胞）上运行UMAP，然后使用Lou...
A gene module identification algorithm and its applications to …
2021年3月9日 · Recently, the most commonly used algorithm in GCNA is Weighted Gene Co-expression Network Analysis (WGCNA) 3, which identifies gene modules based on the idea of …
- 作者: Yan Zhang, Zhengkui Lin, Xiaofeng Lin, Xue Zhang, Qian Zhao, Yeqing Sun
- DOI: 10.1038/s41598-021-84837-y
- Publish Year: 2021
- Publication: Sci Rep. 2021; 11: 5517.
- Gene Module 的研究
WGCNA 简明指南|2. 模块与性状关联分析并识别重要基 …
量化module-trait(模块-特征)关系; 基因与性状和重要模块的关系：基因重要性和模块成员; 模块内分析:鉴定高GS和MM基因; 网络分析结果汇总输出; 模块基因富集分析; 往期; 参考. 本文主要参考官方指南Tutorials for WGCNA R package …
WGCNA（3）：基因模块与性状关联识别重要基因 - 简书
2021年10月24日 · 本文介绍了如何使用R包WGCNA分析基因表达谱数据，识别与表型相关的基因模块和重要基因。文章提供了详细的代码和图示，以及参考材料和原文链接。
GWENA: gene co-expression networks analysis and extended …
在bmcbioinformatics.biomedcentral.com上查看更多信息To illustrate the process of analyzing a single condition with GWENA, we initially focused on studying the muscle gene co-expression computed in the young sub-population. The 95 modules detected on the co-expression score matrix with GWENA were merged according to their similarity indices, which resulted in a tot…- 作者: Gwenaëlle G. Lemoine, Marie-Pier Scott-Boyer, Bathilde Ambroise, Olivier Périn, Arnaud Droit
- 发布日期: 2021年5月25日
- Publish Year: 2021
Hotspot identifies informative gene modules across
2021年5月4日 · To visualize gene modules, it is useful to evaluate per-cell module scores which can then be plotted onto UMAPs, spatial plots, …
- 作者: David DeTomaso, Nir Yosef, Nir Yosef
- Publish Year: 2021
基因共表达模块分析到底是做什么的? - 知乎
通过基因共表达网络分析方法，可以将在功能上相关的基因识别为一个模块，通过对模块的进一步的分析，能够实现筛选module的核心基因，关联性状，代谢通路建模，建立基因互作网络等高级分析。
From genes to modules, from cells to ecosystems - PMC
2022年5月4日 · In this context, a gene module was defined as a set of genes showing a concordant change in their expression profiles under a given set of circumstances (DeRisi et …
A gene module identification algorithm and its applications to …
2021年3月9日 · In this paper, an important downstream task of gene module identification, the identification of key genes, was selected to further prove the good effect of GCNA-Kpca …