pandaR
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Bioconductor - pandaR
Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources. To install this package, start R (version "4.4") and enter: install. packages ("BiocManager") BiocManager:: install ("pandaR") For older versions of R, please refer to the appropriate Bioconductor release.
An Introduction to the pandaR Package - Bioconductor
2024年10月29日 · The fundamental concepts behind the PANDA approach is to model the regulatory network as a bipartite network and estimate edge weights based on the evidence that information from a particular transcription factor i is successfully being passed to a particular gene j. This evidence comes from the agreement between two measured quantities.
pandaR: PANDA Algorithm version 1.22.0 from Bioconductor
2020年11月8日 · Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.
The PANDA approach is to model the regulatory network as a bipartite network and estimate edge weights based on the evidence that information from a particular transcription factor i is successfully being passed to a particular gene j.
panda - R Package Documentation
2020年11月8日 · Each row describes an motif associated with a transcription factor (column 1) a gene (column 2) and a score (column 3) for the motif. A Protein-Protein interaction dataset, a data.frame containing 3 columns.
pandaR: vignettes/pandaR.Rmd - R Package Documentation
2020年11月8日 · In pandaR: PANDA Algorithm Introduction. The fundamental concepts behind the PANDA approach is to model the regulatory network as a bipartite network and estimate edge weights based on the evidence that information from a particular transcription factor i is successfully being passed to a particular gene j. This evidence comes from the ...
pandaR package - RDocumentation
pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions. Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.
netZooR/R/PANDA.R at master · netZoo/netZooR · GitHub
#' Run Python implementation PANDA in R #' \strong{PANDA}(Passing Attributes between Networks for Data Assimilation) is a message-passing model #' to reconstruct gene regulatory network, which integrates multiple sources of biological data …
panda function - RDocumentation
Each row describes a protein-protein interaction between transcription factor 1 (column 1), transcription factor 2 (column 2) and a score (column 3) for the interaction. value to be used …